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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB03G37760.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | C3H | ||||||||
Protein Properties | Length: 745aa MW: 79956.1 Da PI: 7.7373 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 21.7 | 3.7e-07 | 307 | 327 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ G C++Gd C +aHg OB03G37760.1 307 PCPDFRK-GVCRRGDMCEYAHG 327 8******.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF48403 | 2.18E-14 | 89 | 167 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50297 | 15.512 | 89 | 159 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 0.11 | 89 | 119 | IPR002110 | Ankyrin repeat |
Pfam | PF12796 | 1.4E-10 | 89 | 158 | IPR020683 | Ankyrin repeat-containing domain |
Gene3D | G3DSA:1.25.40.20 | 1.4E-16 | 90 | 167 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50088 | 12.209 | 124 | 159 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 0.072 | 124 | 156 | IPR002110 | Ankyrin repeat |
SMART | SM00356 | 1.1E-5 | 302 | 328 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.4E-4 | 306 | 329 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.1E-4 | 307 | 327 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.375 | 307 | 329 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.8E-4 | 335 | 365 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 37 | 337 | 360 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 745 aa Download sequence Send to blast |
MGAAEISGPI RSLLACSFDP TSPDERHADL RARRRRRRRG RCDQEECGAG LLELAADDDA 60 EGLRRALERA PPAAADEAGL WYGRRKVLEH RTPLMVAATY GSLAALRLLL SLPSVDVNRR 120 CGSDGTTALH CAASGGSPSS VEAVKLLLAA GADAGATDAS GCRPADVISV PPKMFDAKIA 180 LQDLLGCPKT GHGVLRVVTR AANPMLSPVS SPTAEDARSP SAAVMMTTKF ADLPRVVTSE 240 KKEYPVDPSL PDIKNSIYAS DEFRMYSFKI RPCSRAYSHD WTECPFVHPG ENARRRDPRK 300 YHYSCVPCPD FRKGVCRRGD MCEYAHGVFE CWLHPAQYRT RLCKDGTSCN RRVCFFAHTT 360 DELRPLYVST GSAVPSPRAS ATAAMEMAAA MGLMPGSPSS VSAVMSPFTP PMSPSGNGMP 420 PSLGWQQPNV PTLHLPGSSL QSSRLRTSLS ARDMPADDYS LMQDIDSQLI NDLCYSRLGS 480 STGNHTSRTK SLNPSNLDDL FSAEMVSSPR YSNADQGAMF SPSHKAAILN QFQQQQQALL 540 SPINTVFSPK AVDNQQLPSH SSLLQASLGL SSPGRMSPRC VESGSPMNSH LAAALAQREK 600 QQQTMRSLSS RDLGPSAARA SGIVGSPLSS SWSKWGSPSG TPDWGVNGEE LGKLRRSSSF 660 ELRSGGDDPD LSWVHTLVKE SPPEKQVTTA ESINSVGPSP LMPPSVSNGE VSSLNTQLDG 720 HDQAAVLGAL LEQMQLDQHI GSLAT |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 30 | 38 | RARRRRRRR |
2 | 30 | 40 | RARRRRRRRGR |
3 | 32 | 38 | RRRRRRR |
4 | 33 | 40 | RRRRRRGR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012611 | 0.0 | CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006651722.2 | 0.0 | PREDICTED: LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein 24 | ||||
Swissprot | Q10EL1 | 0.0 | C3H24_ORYSJ; Zinc finger CCCH domain-containing protein 24 | ||||
TrEMBL | J3LRV0 | 0.0 | J3LRV0_ORYBR; Uncharacterized protein | ||||
STRING | OB03G37760.1 | 0.0 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP823 | 37 | 126 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41900.1 | 0.0 | CCCH-type zinc finger protein with ARM repeat domain |