PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB03G37760.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 745aa    MW: 79956.1 Da    PI: 7.7373
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB03G37760.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.73.7e-07307327526
                   --SGGGGTS--TTTTT-SS-SS CS
       zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                   +C++f++ G C++Gd C +aHg
  OB03G37760.1 307 PCPDFRK-GVCRRGDMCEYAHG 327
                   8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484032.18E-1489167IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029715.51289159IPR020683Ankyrin repeat-containing domain
SMARTSM002480.1189119IPR002110Ankyrin repeat
PfamPF127961.4E-1089158IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.4E-1690167IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5008812.209124159IPR002110Ankyrin repeat
SMARTSM002480.072124156IPR002110Ankyrin repeat
SMARTSM003561.1E-5302328IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.4E-4306329IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-4307327IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.375307329IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.8E-4335365IPR000571Zinc finger, CCCH-type
SMARTSM0035637337360IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 745 aa     Download sequence    Send to blast
MGAAEISGPI RSLLACSFDP TSPDERHADL RARRRRRRRG RCDQEECGAG LLELAADDDA  60
EGLRRALERA PPAAADEAGL WYGRRKVLEH RTPLMVAATY GSLAALRLLL SLPSVDVNRR  120
CGSDGTTALH CAASGGSPSS VEAVKLLLAA GADAGATDAS GCRPADVISV PPKMFDAKIA  180
LQDLLGCPKT GHGVLRVVTR AANPMLSPVS SPTAEDARSP SAAVMMTTKF ADLPRVVTSE  240
KKEYPVDPSL PDIKNSIYAS DEFRMYSFKI RPCSRAYSHD WTECPFVHPG ENARRRDPRK  300
YHYSCVPCPD FRKGVCRRGD MCEYAHGVFE CWLHPAQYRT RLCKDGTSCN RRVCFFAHTT  360
DELRPLYVST GSAVPSPRAS ATAAMEMAAA MGLMPGSPSS VSAVMSPFTP PMSPSGNGMP  420
PSLGWQQPNV PTLHLPGSSL QSSRLRTSLS ARDMPADDYS LMQDIDSQLI NDLCYSRLGS  480
STGNHTSRTK SLNPSNLDDL FSAEMVSSPR YSNADQGAMF SPSHKAAILN QFQQQQQALL  540
SPINTVFSPK AVDNQQLPSH SSLLQASLGL SSPGRMSPRC VESGSPMNSH LAAALAQREK  600
QQQTMRSLSS RDLGPSAARA SGIVGSPLSS SWSKWGSPSG TPDWGVNGEE LGKLRRSSSF  660
ELRSGGDDPD LSWVHTLVKE SPPEKQVTTA ESINSVGPSP LMPPSVSNGE VSSLNTQLDG  720
HDQAAVLGAL LEQMQLDQHI GSLAT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13038RARRRRRRR
23040RARRRRRRRGR
33238RRRRRRR
43340RRRRRRGR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006651722.20.0PREDICTED: LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein 24
SwissprotQ10EL10.0C3H24_ORYSJ; Zinc finger CCCH domain-containing protein 24
TrEMBLJ3LRV00.0J3LRV0_ORYBR; Uncharacterized protein
STRINGOB03G37760.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82337126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain